Scalable Parameterised Algorithms for two Steiner Problems
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Journal Title
Journal ISSN
Volume Title
Perustieteiden korkeakoulu |
Master's thesis
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Author
Date
2017-08-28
Department
Major/Subject
Computer Science
Mcode
SCI3042
Degree programme
Master’s Programme in Computer, Communication and Information Sciences
Language
en
Pages
104 + 8
Series
Abstract
In the Steiner Problem, we are given as input (i) a connected graph with nonnegative integer weights associated with the edges; and (ii) a subset of vertices called terminals. The task is to find a minimum-weight subgraph connecting all the terminals. In the Group Steiner Problem, we are given as input (i) a connected graph with nonnegative integer weights associated with the edges; and (ii) a collection of subsets of vertices called groups. The task is to find a minimum-weight subgraph that contains at least one vertex from each group. Even though the Steiner Problem and the Group Steiner Problem are NP-complete, they are known to admit parameterised algorithms that run in linear time in the size of the input graph and the exponential part can be restricted to the number of terminals and the number of groups, respectively. In this thesis, we discuss two parameterised algorithms for solving the Steiner Problem, and by reduction, the Group Steiner Problem: (a) a dynamic programming algorithm presented by Dreyfus and Wagner in 1971; and (b) an improvement of the Dreyfus-Wagner algorithm presented by Erickson, Monma and Veinott in 1987 that runs in linear time in the size of the input graph. We develop a parallel implementation of the Erickson-Monma-Veinott algorithm, and carry out extensive experiments to study the scalability of our implementation with respect to its runtime, memory bandwidth, and memory usage. Our experimental results demonstrate that the implementation can scale up to a billion edges on a single modern compute node provided that the number of terminals is small. For example, using our parallel implementation a Steiner tree for a graph with hundred million edges and ten terminals can be found in approximately twenty minutes. For an input graph with one hundred million edges and ten terminals, our parallel implementation is at least fifteen times faster than its serial counterpart on a Haswell compute node with two processors and twelve cores in each processor. Our implementation of the Erickson-Monma-Veinott algorithm is available as open source.Description
Supervisor
Kaski, PetteriThesis advisor
Kaski, PetteriKeywords
Steiner problem, group Steiner problem, Ericson-Monma-Veinott algorithm, Dreyfus-Wagner algorithm, parameterised algorithms, algorithm engineering
