Model-based exploration of interactions in the visual cortex

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Volume Title
School of Science | Doctoral thesis (article-based) | Defence date: 2015-12-16
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Date
2015
Major/Subject
Mcode
Degree programme
Language
en
Pages
64 + app. 94
Series
Aalto University publication series DOCTORAL DISSERTATIONS, 193/2015
Abstract
The mammalian visual system is a dynamic and efficient data processing framework. Specifically, the cerebral cortex which is a structured network of cells benefits from an efficient information transmission coding. This thesis presents a model-based exploration of visual cortex in order to expand our current knowledge about brain mechanisms; specifically, the mechanism of information coding behind visual interactions. In the first study, we designed a functional magnetic resonance imaging (fMRI) experiment to explore a possible link between contextual modulation and efficient macroscopic spatial response coding in the visual cortex. The results imply that visual interactions were best explained with a decorrelation model which predicts average modulation strength by fully decorating the spatial fMRI signals.  In the second study, we reviewed a potential approach to relate fMRI activation patterns to neural population activity. We went over existing knowledge about neurovascular coupling as a key point in predicting fMRI signal based on a neural network simulation and provided a sketch which covered practical steps to bridge the gap between mathematical modeling of single neuron responses to neuroimaging data with a mesoscopic biomimetic neural network. The proposed biomimetic neural network provides insight into data processing in cortical neural networks. In the third study, we designed an fMRI experiment and based on the blueprint of the second study simulated a simplified neural network representing the visual cortex. Then, we tried to replicate the experimental fMRI signal by means of this biophysically plausible neural network simulator. Our results highlight the role of dendritic structure of neurons to be able to repeat the experimental fMRI signals with high fidelity. In the fourth study, we used similar simulator as in the third study and tried to replicate expected neural activation pattern based on a well know contextual modulation (area summation function) in primary visual cortex. We anticipated that by getting closer to an activation pattern driven by area summation function, the efficiency of the neural network would be increased. Our results show that spiking frequency, entropy per spike and sparseness (as measures of network efficiency) are all associated with the natural area summation function.  In summary, results of this thesis suggest that contextual modulation is related to efficiency of the visual system. In addition, it is possible to predict fMRI and expected area summation activation pattern by a mesoscopic neural network, however compartmental neurons have a key role to achieve this prediction.
Description
Supervising professor
Hämäläinen, Matti, Prof., Aalto University, Department of Neuroscience and Biomedical Engineering, Finland
Thesis advisor
Vanni, Simo, Dr., University of Helsinki and Helsinki University Hospital, Clinical Neurosciences, Neurology, Finland
Keywords
visual system, functional magnetic resonance imaging, efficiency, contextual modulation, spiking network model
Other note
Parts
  • [Publication 1]: Sharifian F, Nurminen L, Vanni S (2013) Visual interactions conform to pattern decorrelation in multiple cortical areas. PLoS One 8(7): e68046.
    DOI: 10.1371/journal.pone.0068046 View at publisher
  • [Publication 2]: Vanni S, Sharifian F, Heikkinen H, Vigário R (2015) Modeling fMRI signals can provide insights into neural processing in the cerebral cortex. J Neurophysio.
    DOI: 10.1152/jn.00332.2014 View at publisher
  • [Publication 3]: Heikkinen H, Sharifian F, Vigário R, Vanni S (2015) Feedback to distal dendrites links fMRI signals to neural receptive fields in a spiking network model of the visual cortex. J Neurophysiol.
    DOI: 10.1152/jn.00169.2015 View at publisher
  • [Publication 4]: Sharifian F, Heikkinen H, Vigário R, Vanni S (2015) Contextual modulation of receptive field increases efficiency in modelled visual cortex. Frontiers in Computational Neuroscience, under review. Reprint
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