Browsing by Author "Corander, Jukka"

Now showing items 21-28 of 28

Title: Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation Author(s): Lees, John A.; Tonkin-Hill, Gerry; Yang, Zhirong; Corander, Jukka Date: 2022-10-10 Series: Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Volume 377, issue 1861
Title: Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium Author(s): Arredondo-Alonso, Sergio; Top, Janetta; McNally, Alan; Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Marttinen, Pekka; Braat, Johanna; Rogers, Malbert; van Schaik, Willem; Kaski, Samuel; Willems, Rob J L; Corander, Jukka; Schürch, Anita Date: 2020-01-01 Series: MBIO, Volume 11, issue 1
Title: Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing Author(s): Wee, Bryan A.; Alves, Joana; Lindsay, Diane, S.J.; Klatt, Ann-Brit; Sargison, Fiona A.; Cameron, Ross L.; Pickering, Amy; Gorzynski, Jamie; Corander, Jukka; Marttinen, Pekka; Opitz, Bastian; Smith, Andrew J.; Fitzgerald, J. Ross Date: 2021-12-09 Series: Nature Communications, Volume 12, issue 1
Title: Resolving outbreak dynamics using approximate bayesian computation for stochastic birth–death models Author(s): Lintusaari, Jarno; Blomstedt, Paul; Rose, Brittany; Sivula, Tuomas; Gutmann, Michael U.; Kaski, Samuel; Corander, Jukka Date: 2019 Series: Wellcome Open Research, Volume 4
Title: Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes Author(s): Lees, John A.; Vehkala, Minna; Välimäki, Niko; Harris, Simon R.; Chewapreecha, Claire; Croucher, Nicholas J.; Marttinen, Pekka; Davies, Mark R.; Steer, Andrew C.; Tong, Steven Y C; Honkela, Antti; Parkhill, Julian; Bentley, Stephen D.; Corander, Jukka Date: 2016-09-16 Series: NATURE COMMUNICATIONS, Volume 7
Title: Stochastic cluster embedding Author(s): Yang, Zhirong; Chen, Yuwei; Sedov, Denis; Kaski, Samuel; Corander, Jukka Date: 2023-02 Series: STATISTICS AND COMPUTING, Volume 33, issue 1
Title: SuperDCA for genome-wide epistasis analysis Author(s): Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Xu, Yingying; Lees, John A.; Bentley, Stephen; Croucher, Nicholas J; Corander, Jukka Date: 2018-05-29 Series: Microbial Genomics, Volume 4, issue 6
Title: Whole-genome sequencing for routine pathogen surveillance in public health Author(s): Aanensen, David M.; Feil, Edward J.; Holden, Matthew T G; Dordel, Janina; Yeats, Corin A.; Fedosejev, Artemij; Goater, Richard; Castillo-Ramírez, Santiago; Corander, Jukka; Colijn, Caroline; Chlebowicz, Monika A.; Schouls, Leo; Heck, Max; Pluister, Gerlinde; Ruimy, Raymond; Kahlmeter, Gunnar; Åhman, Jenny; Matuschek, Erika; Friedrich, Alexander W.; Parkhill, Julian; Bentley, Stephen D.; Spratt, Brian G.; Grundmann, Hajo; Krziwanek, Karina; Stumvoll, Sabine; Koller, Walter; Denis, Olivier; Struelens, Marc; Nashev, Dimitr; Budimir, Ana; Kalenic, Smilja; Pieridou-Bagatzouni, Despo; Jakubu, Vladislav; Zemlickova, Helena; Westh, Henrik; Larsen, Anders Rhod; Skov, Robert; Laurent, Frederic; Ettienne, Jerome; Strommenger, Birgit; Witte, Wolfgang; Vourli, Sofia; Vatopoulos, Alkis; Vainio, Anni; Vuopio-Varkila, Jaana; Fuzi, Miklos; Ungvári, Erika; Murchan, Stephan; Rossney, Angela; Miklasevics, Edvins; Balode, Arta; Haraldsson, Gunnsteinn; Kristinsson, Karl G.; Monaco, Monica; Pantosti, Annalisa; Borg, Michael; Van Santen-Verheuvel, Marga; Huijsdens, Xander; Marstein, Lillian; Jacobsen, Trond; Simonsen, Gunnar Skov; Airesde-Sousa, Marta; De Lencastre, Herminia; Luczak-Kadlubowska, Agnieszka; Hryniewicz, Waleria; Straut, Monica; Codita, Irina; Perez-Vazquez, Maria; Iglesias, Jesus Oteo; Spik, Vesna Cvitkovic; Mueller-Premru, Manica; Haeggman, Sara; Olsson-Liljequist, Barbro; Ellington, Matthew; Kearns, Angela Date: 2016-05-01 Series: MBIO, Volume 7, issue 3