Browsing by Department "University of Oxford"
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- Bose-Hubbard lattice as a controllable environment for open quantum systems
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2018-04-09) Cosco, Francesco; Borrelli, Massimo; Mendoza-Arenas, Juan José; Plastina, Francesco; Jaksch, Dieter; Maniscalco, SabrinaWe investigate the open dynamics of an atomic impurity embedded in a one-dimensional Bose-Hubbard lattice. We derive the reduced evolution equation for the impurity and show that the Bose-Hubbard lattice behaves as a tunable engineered environment allowing one to simulate both Markovian and non-Markovian dynamics in a controlled and experimentally realizable way. We demonstrate that the presence or absence of memory effects is a signature of the nature of the excitations induced by the impurity, being delocalized or localized in the two limiting cases of a superfluid and Mott insulator, respectively. Furthermore, our findings show how the excitations supported in the two phases can be characterized as information carriers. - Discovery of optical and infrared accretion disc wind signatures in the black hole candidate MAXI J1348 630
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2022-08-10) Panizo-Espinar, G.; Armas Padilla, M.; Muñoz-Darias, T.; Koljonen, K. I.I.; Cúneo, V. A.; Sánchez-Sierras, J.; Mata Sánchez, D.; Casares, J.; Corral-Santana, J.; Fender, R. P.; Jiménez-Ibarra, F.; Ponti, G.; Steeghs, D.; Torres, M. A.P.MAXI J1348 630 is a low mass X-ray binary discovered in 2019 during a bright outburst. During this event, the system experienced both hard and soft states following the standard evolution. We present multi-epoch optical and near-infrared spectroscopy obtained with X-shooter at the Very Large Telescope. Our dataset includes spectra taken during the brightest phases of the outburst as well as the decay towards quiescence. We study the evolution of the main emission lines, paying special attention to the presence of features commonly associated with accretion disc winds, such as blueshifted absorptions, broad emission line wings and flat-top profiles. We find broad emission line wings in Hα during the hard-to-soft transition and blueshifted absorption troughs at 500 km s 1 in Hβ, He I 5876, Hα and Paβ during the bright soft-intermediate state. In addition, flat-top profiles are seen throughout the outburst. We interpret these observables as signatures of a cold (i.e., optical-to-infrared) accretion disc wind present in the system. We discuss the properties of the wind and compare them with those seen in other X-ray transients. In particular, the wind velocity that we observe is low when compared to those of other systems, which might be a direct consequence of the relatively low binary inclination, as suggested by several observables. This study strengthens the hypothesis that cold winds are a common feature in low mass X-ray binaries and that they can also be detected in low inclination objects via high-quality optical and infrared spectroscopy. - Dynamics of hierarchical weighted networks of van der Pol oscillators
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2020-12-01) Monsivais-Velazquez, Daniel; Bhattacharya, Kunal; Barrio, Rafael A.; Maini, Philip K.; Kaski, Kimmo K.We investigate the dynamics of regular fractal-like networks of hierarchically coupled van der Pol oscillators. The hierarchy is imposed in terms of the coupling strengths or link weights. We study the low frequency modes, as well as frequency and phase synchronization, in the network by a process of repeated coarse-graining of oscillator units. At any given stage of this process, we sum over the signals from the oscillator units of a clique to obtain a new oscillating unit. The frequencies and the phases for the coarse-grained oscillators are found to progressively synchronize with the number of coarse-graining steps. Furthermore, the characteristic frequency is found to decrease and finally stabilize to a value that can be tuned via the parameters of the system. We compare our numerical results with those of an approximate analytic solution and find good qualitative agreement. Our study on this idealized model shows how oscillations with a precise frequency can be obtained in systems with heterogeneous couplings. It also demonstrates the effect of imposing a hierarchy in terms of link weights instead of one that is solely topological, where the connectivity between oscillators would be the determining factor, as is usually the case. - HAPNEST : efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2023-09-02) Wharrie, Sophie; Yang, Zhiyu; Raj, Vishnu; Monti, Remo; Gupta, Rahul; Wang, Ying; Martin, Alicia; O'Connor, Luke J.; Kaski, Samuel; Marttinen, Pekka; Palamara, Pier Francesco; Lippert, Christoph; Ganna, AndreaMOTIVATION: Existing methods for simulating synthetic genotype and phenotype datasets have limited scalability, constraining their usability for large-scale analyses. Moreover, a systematic approach for evaluating synthetic data quality and a benchmark synthetic dataset for developing and evaluating methods for polygenic risk scores are lacking. RESULTS: We present HAPNEST, a novel approach for efficiently generating diverse individual-level genotypic and phenotypic data. In comparison to alternative methods, HAPNEST shows faster computational speed and a lower degree of relatedness with reference panels, while generating datasets that preserve key statistical properties of real data. These desirable synthetic data properties enabled us to generate 6.8 million common variants and nine phenotypes with varying degrees of heritability and polygenicity across 1 million individuals. We demonstrate how HAPNEST can facilitate biobank-scale analyses through the comparison of seven methods to generate polygenic risk scoring across multiple ancestry groups and different genetic architectures. AVAILABILITY AND IMPLEMENTATION: A synthetic dataset of 1 008 000 individuals and nine traits for 6.8 million common variants is available at https://www.ebi.ac.uk/biostudies/studies/S-BSST936. The HAPNEST software for generating synthetic datasets is available as Docker/Singularity containers and open source Julia and C code at https://github.com/intervene-EU-H2020/synthetic_data. - High-energy gamma-ray observations of the accreting black hole V404 Cygni during its 2015 June outburst
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2016-10-11) Loh, A.; Corbel, S.; Dubus, G.; Rodriguez, J.; Grenier, I.; Hovatta, T.; Pearson, T.; Readhead, A.; Fender, R.; Mooley, K.We report on Fermi/Large Area Telescope observations of the accreting black hole low-mass X-ray binary V404 Cygni during its outburst in 2015 June-July. Detailed analyses reveal a possible excess of γ -ray emission on 2015 26 June, with a very soft spectrum above 100 MeV, at a position consistent with the direction of V404 Cyg (within the 95 per cent confidence region and a chance probability of 4 × 10-4). This emission cannot be associated with any previously known Fermi source. Its temporal coincidence with the brightest radio and hard X-ray flare in the light curve of V404 Cyg, at the end of the main active phase of its outburst, strengthens the association with V404 Cyg. If the γ -ray emission is associated with V404 Cyg, the simultaneous detection of 511 keV annihilation emission by INTEGRAL reqires that the high-energy γ -rays originate away from the corona, possibly in a Blandford-Znajek jet. The data give support to models involving a magnetically arrested disc where a bright γ -ray jet can re-form after the occurrence of a major transient ejection seen in the radio. - Non-Linear Dynamical Analysis of Resting Tremor for Demand-Driven Deep Brain Stimulation
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2019-06-01) Camara, Carmen; Subramaniyam, Narayan P.; Warwick, Kevin; Parkkonen, Lauri; Aziz, Tipu; Pereda, ErnestoParkinson's Disease (PD) is currently the second most common neurodegenerative disease. One of the most characteristic symptoms of PD is resting tremor. Local Field Potentials (LFPs) have been widely studied to investigate deviations from the typical patterns of healthy brain activity. However, the inherent dynamics of the Sub-Thalamic Nucleus (STN) LFPs and their spatiotemporal dynamics have not been well characterized. In this work, we study the non-linear dynamical behaviour of STN-LFPs of Parkinsonian patients using ε -recurrence networks. RNs are a non-linear analysis tool that encodes the geometric information of the underlying system, which can be characterised (for example, using graph theoretical measures) to extract information on the geometric properties of the attractor. Results show that the activity of the STN becomes more non-linear during the tremor episodes and that ε -recurrence network analysis is a suitable method to distinguish the transitions between movement conditions, anticipating theonset of the tremor, with the potential for application in a demand-driven deep brain stimulation system. - Planck 2015 results
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2016-10-01) Ade, P. A R; Aghanim, N.; Arnaud, M.; Ashdown, M.; Aumont, J.; Baccigalupi, C.; Banday, A. J.; Barreiro, R. B.; Bartlett, J. G.; Bartolo, N.; Battaner, E.; Battye, R.; Benabed, K.; Benoît, A.; Benoit-Lévy, A.; Bernard, J. P.; Bersanelli, M.; Bielewicz, P.; Bock, J. J.; Bonaldi, A.; Bonavera, L.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Boulanger, F.; Bucher, M.; Burigana, C.; Butler, R. C.; Calabrese, E.; Cardoso, J. F.; Catalano, A.; Challinor, A.; Chamballu, A.; Chary, R. R.; Chiang, H. C.; Chluba, J.; Christensen, P. R.; Church, S.; Clements, D. L.; Colombi, S.; Colombo, L. P L; Combet, C.; Coulais, A.; Crill, B. P.; Curto, A.; Cuttaia, F.; Danese, L.; Davies, R. D.; Davis, R. J.; De Bernardis, P.; De Rosa, A.; De Zotti, G.; Delabrouille, J.; Désert, F. X.; Di Valentino, E.; Dickinson, C.; Diego, J. M.; Dolag, K.; Dole, H.; Donzelli, S.; Doré, O.; Douspis, M.; Ducout, A.; Dunkley, J.; Dupac, X.; Efstathiou, G.; Elsner, F.; Enßlin, T. A.; Eriksen, H. K.; Farhang, M.; Fergusson, J.; Finelli, F.; Forni, O.; Frailis, M.; Fraisse, A. A.; Franceschi, E.; Frejsel, A.; Galeotta, S.; Galli, S.; Ganga, K.; Gauthier, C.; Gerbino, M.; Ghosh, T.; Giard, M.; Giraud-Héraud, Y.; Giusarma, E.; Gjerløw, E.; González-Nuevo, J.; Górski, K. M.; Gratton, S.; Gregorio, A.; Gruppuso, A.; Gudmundsson, J. E.; Hamann, J.; Hansen, F. K.; Hanson, D.; Harrison, D. L.; Helou, G.; Henrot-Versillé, S.; Hernández-Monteagudo, C.; Herranz, D.; Hildebrandt, S. R.; Hivon, E.; Hobson, M.; Holmes, W. A.; Hornstrup, A.; Hovest, W.; Huang, Z.; Huffenberger, K. M.; Hurier, G.; Jaffe, A. H.; Jaffe, T. R.; Jones, W. C.; Juvela, M.; Keihänen, E.; Keskitalo, R.; Kisner, T. S.; Kneissl, R.; Knoche, J.; Knox, L.; Kunz, M.; Kurki-Suonio, H.; Lagache, G.; Lähteenmäki, A.; Lamarre, J. M.; Lasenby, A.; Lattanzi, M.; Lawrence, C. R.; Leahy, J. P.; Leonardi, R.; Lesgourgues, J.; Levrier, F.; Lewis, A.; Liguori, M.; Lilje, P. B.; Linden-Vørnle, M.; López-Caniego, M.; Lubin, P. M.; Maciás-Pérez, J. F.; Maggio, G.; Maino, D.; Mandolesi, N.; Mangilli, A.; Marchini, A.; Maris, M.; Martin, P. G.; Martinelli, M.; Martínez-González, E.; Masi, S.; Matarrese, S.; Mcgehee, P.; Meinhold, P. R.; Melchiorri, A.; Melin, J. B.; Mendes, L.; Mennella, A.; Migliaccio, M.; Millea, M.; Mitra, S.; Miville-Deschênes, M. A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Moss, A.; Munshi, D.; Murphy, J. A.; Naselsky, P.; Nati, F.; Natoli, P.; Netterfield, C. B.; Nørgaard-Nielsen, H. U.; Noviello, F.; Novikov, D.; Novikov, I.; Oxborrow, C. A.; Paci, F.; Pagano, L.; Pajot, F.; Paladini, R.; Paoletti, D.; Partridge, B.; Pasian, F.; Patanchon, G.; Pearson, T. J.; Perdereau, O.; Perotto, L.; Perrotta, F.; Pettorino, V.; Piacentini, F.; Piat, M.; Pierpaoli, E.; Pietrobon, D.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Popa, L.; Pratt, G. W.; Prézeau, G.; Prunet, S.; Puget, J. L.; Rachen, J. P.; Reach, W. T.; Rebolo, R.; Reinecke, M.; Remazeilles, M.; Renault, C.; Renzi, A.; Ristorcelli, I.; Rocha, G.; Rosset, C.; Rossetti, M.; Roudier, G.; Rouillé D'orfeuil, B.; Rowan-Robinson, M.; Rubinõ-Martín, J. A.; Rusholme, B.; Said, N.; Salvatelli, V.; Salvati, L.; Sandri, M.; Santos, D.; Savelainen, M.; Savini, G.; Scott, D.; Seiffert, M. D.; Serra, P.; Shellard, E. P S; Spencer, L. D.; Spinelli, M.; Stolyarov, V.; Stompor, R.; Sudiwala, R.; Sunyaev, R.; Sutton, D.; Suur-Uski, A. S.; Sygnet, J. F.; Tauber, J. A.; Terenzi, L.; Toffolatti, L.; Tomasi, M.; Tristram, M.; Trombetti, T.; Tucci, M.; Tuovinen, J.; Türler, M.; Umana, G.; Valenziano, L.; Väliviita, J.; Van Tent, F.; Vielva, P.; Villa, F.; Wade, L. A.; Wandelt, B. D.; Wehus, I. K.; White, M.; White, S. D M; Wilkinson, A.; Yvon, D.; Zacchei, A.; Zonca, A.This paper presents cosmological results based on full-mission Planck observations of temperature and polarization anisotropies of the cosmic microwave background (CMB) radiation. Our results are in very good agreement with the 2013 analysis of the Planck nominal-mission temperature data, but with increased precision. The temperature and polarization power spectra are consistent with the standard spatially-flat 6-parameter ΛCDM cosmology with a power-law spectrum of adiabatic scalar perturbations (denoted "base ΛCDM" in this paper). From the Planck temperature data combined with Planck lensing, for this cosmology we find a Hubble constant, H0 = (67.8 ± 0.9) km s-1Mpc-1, a matter density parameter Ωm = 0.308 ± 0.012, and a tilted scalar spectral index with ns = 0.968 ± 0.006, consistent with the 2013 analysis. Note that in this abstract we quote 68% confidence limits on measured parameters and 95% upper limits on other parameters. We present the first results of polarization measurements with the Low FrequencyInstrument at large angular scales. Combined with the Planck temperature and lensing data, these measurements give a reionization optical depth of τ = 0.066 ± 0.016, corresponding to a reionization redshift of \hbox{$z-{\rm re}=8.8{+1.7}-{-1.4}$}. These results are consistent with those from WMAP polarization measurements cleaned for dust emission using 353-GHz polarization maps from the High Frequency Instrument. We find no evidence for any departure from base ΛCDM in the neutrino sector of the theory; for example, combining Planck observations with other astrophysical data we find Neff = 3.15 ± 0.23 for the effective number of relativistic degrees of freedom, consistent with the value Neff = 3.046 of the Standard Model of particle physics. The sum of neutrino masses is constrained to â'mν < 0.23 eV. The spatial curvature of our Universe is found to be very close to zero, with | ΩK | < 0.005. Adding a tensor component as a single-parameter extension to base ΛCDM we find an upper limit on the tensor-to-scalar ratio of r0.002< 0.11, consistent with the Planck 2013 results and consistent with the B-mode polarization constraints from a joint analysis of BICEP2, Keck Array, and Planck (BKP) data. Adding the BKP B-mode data to our analysis leads to a tighter constraint of r0.002 < 0.09 and disfavours inflationarymodels with a V(φ) φ2 potential. The addition of Planck polarization data leads to strong constraints on deviations from a purely adiabatic spectrum of fluctuations. We find no evidence for any contribution from isocurvature perturbations or from cosmic defects. Combining Planck data with other astrophysical data, including Type Ia supernovae, the equation of state of dark energy is constrained to w =-1.006 ± 0.045, consistent with the expected value for a cosmological constant. The standard big bang nucleosynthesis predictions for the helium and deuterium abundances for the best-fit Planck base ΛCDM cosmology are in excellent agreement with observations. We also constraints on annihilating dark matter and onpossible deviations from the standard recombination history. In neither case do we find no evidence for new physics. The Planck results for base ΛCDM are in good agreement with baryon acoustic oscillation data and with the JLA sample of Type Ia supernovae. However, as in the 2013 analysis, the amplitude of the fluctuation spectrum is found to be higher than inferred from some analyses of rich cluster counts and weak gravitational lensing. We show that these tensions cannot easily be resolved with simple modifications of the base ΛCDM cosmology. Apart from these tensions, the base ΛCDM cosmology provides an excellent description of the Planck CMB observations and many other astrophysical data sets. - Quantifying gender preferences in human social interactions using a large cellphone dataset
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2019-03-12) Ghosh, Asim; Monsivais, Daniel; Bhattacharya, Kunal; Dunbar, Robin I.M.; Kaski, KimmoIn human relations individuals’ gender and age play a key role in the structures and dynamics of their social arrangements. In order to analyze the gender preferences of individuals in interaction with others at different stages of their lives we study a large mobile phone dataset. To do this we consider four fundamental gender-related caller and callee combinations of human interactions, namely male to male, male to female, female to male, and female to female, which together with age, kinship, and different levels of friendship give rise to a wide scope of human sociality. Here we analyse the relative strength of these four types of interaction using call detail records. Our analysis suggests strong age dependence for an individual of one gender choosing to call an individual of either gender. We observe a strong bonding with the opposite gender across most of their reproductive age. However, older women show a strong tendency to connect to another female that is one generation younger in a way that is suggestive of the grandmothering effect. We also find that the relative strength among the four possible interactions depends on phone call duration. For calls of medium and long duration, opposite gender interactions are significantly more probable than same gender interactions during the reproductive years, suggesting potential emotional exchange between spouses. By measuring the fraction of calls to other generations we find that mothers tend to make calls more to their daughters than to their sons, whereas fathers make calls more to their sons than to their daughters. For younger callers, most of their calls go to the same generation contacts, while older people call the younger people more frequently, which supports the suggestion that affection flows downward. Our study primarily rests on resolving the nature of interactions by examining the durations of calls. In addition, we analyse the intensity of the observed effects using a score based on a null model. - Reversible Monadic Computing
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2015-12-21) Heunen, Chris; Karvonen, MarttiWe extend categorical semantics of monadic programming to reversible computing, by considering monoidal closed dagger categories: the dagger gives reversibility, whereas closure gives higher-order expressivity. We demonstrate that Frobenius monads model the appropriate notion of coherence between the dagger and closure by reinforcing Cayley's theorem; by proving that effectful computations (Kleisli morphisms) are reversible precisely when the monad is Frobenius; by characterizing the largest reversible subcategory of Eilenberg-Moore algebras; and by identifying the latter algebras as measurements in our leading example of quantum computing. Strong Frobenius monads are characterized internally by Frobenius monoids. - Stabilisation of hollow colloidal TiO2particles by partial coating with evenly distributed lobes
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2021-02-14) Peng, Bo; Liu, Yanyan; Aarts, Dirk G.A.L.; Dullens, Roel P.A.Photo-catalytically active crystalline TiO2has attracted special attention due to its relevance for renewable energy and is typically obtained by the calcination of amorphous TiO2. However, stabilising hollow colloidal TiO2particles against aggregation during calcination without compromising their photocatalytic activity poses two conflicting demands: to be stable their surface needs to be coated, while efficient photocatalysis requires an exposed TiO2surface. Here, this incompatibility is resolved by partially coating TiO2shells with evenly distributed 3-trimethoxysilyl propyl methacrylate (TPM) lobes. These lobes act both as steric barriers and surface charge enhancers that efficiently stabilise the TiO2shells against aggregation during calcination. The morphology of the TPM lobes and their coverage, and the associated particle stability during the calcination-induced TiO2crystallization, can be controlled by the pH and the contact angle between TPM and TiO2. The crystal structure and the grain size of the coated TiO2shells are controlled by varying the calcination temperature, which allows tuning their photocatalytic activity. Finally, the durable photocatalytic activity over many usage cycles of the coated TiO2compared to uncoated shells is demonstrated in a simple way by measuring the photo-degradation of a fluorescent dye. Our approach offers a general strategy for stabilising colloidal materials, without compromising access to their active surfaces.