Browsing by Author "Liu, Yang"
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- Reproducibility of fluorescent expression from engineered biological constructs in E. coli
A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä(2016-03-01) Beal, Jacob; Haddock-Angelli, Traci; Gershater, Markus; De Mora, Kim; Lizarazo, Meagan; Hollenhorst, Jim; Rettberg, Randy; Demling, Philipp; Hanke, Rene; Osthege, Michael; Schechtel, Anna; Sudarsan, Suresh; Zimmermann, Arne; Gabryelczyk, Bartosz; Ikonen, Martina; Salmela, Minnamari; Acar, Muradýye; Aktas, Muhammed Fatih; Bestepe, Furkan; Ceylan, Furkan Sacit; Cigdem, Sadýk; Dohan, Mikail; Elitok, Mustafa; Gunduz, Mehmet; Gunduz, Esra; Hatipoglu, Omer Faruk; Kaya, Turan; Sayin, Orhan; Tapan, Safa; Tereci, Osman Faruk; Uçar, Abdullah; Yilmaz, Mustafa; Barrick, Jeffrey; Gutierrez, Alex; Mishler, Dennis; Monk, Jordan; Mortensen, Kate; Shin, Nathan; Watkins, Ella; Chen, Yintong; Jin, Yuji; Shi, Yuanjie; Zhang, Haoqian Myelin; Ono, Bruno; Paino, Ieda Maria Martinez; Ribovski, Lais; Silva, Ivan; Zampronio, Danilo Keiji; Birkholz, Nils; Busche, Rudiger Frederik; Konzock, Oliver; Lippold, Steffen; Ludwig, Carsten; Philippi, Melanie; Platz, Lukas; Sigismund, Christian; Weber, Susanne; Wehrs, Maren; Werchau, Niels; Wronska, Anna; Yen, Zen Zen; Agarwal, Yash; Appleton, Evan; Densmore, Douglas; Esmurria, Ariela; Lewis, Kathleen; Pacheco, Alan; Bruchez, Marcel; Peters, Danielle; Telmer, Cheryl; Wang, Lena; Canas-Duarte, Silvia; Giraldo-Perez, Daniel; Gomez-Garzon, Camilo; Madrid-Wolff, Jorge; Marin-Medina, Nathaly; Mazzanti, Valentina; Rodriguez-Forero, Laura; Scher, Eitan; Dowell, Robin; O'Hara, Samantha; Pogoda, Cloe Simone; Shattuck, Kendra; Altintas, Ali; Bali, Anne Pihl; Bech, Rasmus; Egholm, Anne; Hansen, Anne Sofie Laerke; Jensen, Kristian; Karlsen, Kristian Barreth; Mosbech, Caroline; Belkhelfa, Sophia; Berenger, Noemie; Bodinier, Romain; Jacry, Cecile; Matabishi-Bibi, Laura; Parutto, Pierre; Zaworski, Julie; De Vries, Andries; De Wijs, Freek; Elbert, Rick; Hielkema, Lisa; Jagadeesan, Chandhuru; Jayawardhana, Bayu; Kuipers, Oscar; Lauxen, Anna; Meijer, Thomas; Mous, Sandra; Van Raaphorst, Renske; Saraf, Aakanksha; Schepers, Otto; Smits, Oscar; Veening, Jan Willem; Weme, Ruud Detert Oude; Wieske, Lianne; Ainsworth, Catherine; Spencer-Milnes, Xenia; Ávila, Alejandro Gómez; Gamez, Eddie Cano; Huerta, Ana Laura Torres; Ramirez, Carlos Alejandro Meza; Popp, Philipp; Radeck, Jara; Sommer, Anna; Li, Xiangkai; Wu, Qi; Zhao, Hongxia; Zhao, Ruixue; Bastuzel, Irem; Ceyhan, Yasemin; Gursel, Mayda; Kizil, Burak; Kumru, Ilkem; Kuvvet, Yasemin; Tercan, Helin; Yuksel, Seniz; Niyazmetova, Luiza; Ang, Timothy; Black, Lucas; Kelly, Ciaran; Wadhams, George; Basier, Clovis; Czerwinska, Urszula; Ananda, Cindy Suci; Al Azhar, Muhammad; Elviantari, Adelia; Fitriana, Maya; Witarto, Arief Budi; Yulianti; Hou, Qingfeng; Pei, Wan; Rifei, Chen; Rong, Wang; Wei, Huang; Yushan, Zhang; Jianguo, He; Lai, Dengwen; Li, Pai; Liu, Jianheng; Ni, Chunyang; Zhang, Qianbin; Cadenas, Cinthya; Canabal, Eduardo J Zardain; Cantu, Claudia Nallely Alonso; Cantu, Mercedes Alejandra Vazquez; Canedo, Eduardo Cepeda; Cordova, Cesar Miguel Valdez; De La Paz Espinosa, Jose Alberto; Garcia, Carlos Enrique Alavez; Heredia, Ana Laura Navarro; Hernandez, Adriana; Jauregui, Sebastian Valdivieso; Montiel, Eduardo Ramirez; Morales, Eduardo Serna; Morales, Yamile Minerva Castellanos; Pena, Omar Alonso Cantu; Ramirez-Rodríguez, Eduardo A.; Trejo, Elizabeth Vallejo; Ceja, Jesus Gilberto Rodriguez; Hernandez, Jesus Eduardo Martinez; Hernandez, Mario Alberto Pena; Perez, Enrique Amaya; Ramirez, Rebeca Paola Torres; Rocha, J. Claudio Moreno; Sanchez, Alber; Vazquez, Claudia Melissa Guerra; Hanzel, Martin; Mohand-Said, Sarah; Sawar, Shihab; Siriwardena, Dylan; Tzahristos, Alex; Anlind, Nils; Friberg, Martin; Gullberg, Erik; Herman, Stephanie; Christensen, Dallin; Gertsch, Sara; Maxfield, Cody; Miller, Charles; Putman, Ryan; Bauerl, Christine; Lopez, Lucia T Estelles; Huet-Trujillo, Estefania; Vilar, Marta Vazquez; Birk, Marlène Sophie; Claassens, Nico; De Koster, Walter; Van Rosmalen, Rik; Wu, Wen Ying; Davies, Sian; Goss, Dan; Rostain, William; Tye, Chelsey; Yousaf, Waqar; Farny, Natalie; LaJeunesse, Chloe; Turland, Alex; Chen, An; Chen, Jielin; Chen, Yahong; Chen, Zehua; Fang, Baishan; Fu, Xiaotong; Guo, Xifeng; Lei, Yiying; Li, Jianqiao; Li, Zhe; Liu, Chang; Liu, Weibing; Liu, Yang; Lv, Yizhu; Ruan, Qingyu; Su, Yue; Tang, Chun; Wang, Yushen; Wu, Fan; Yan, Xiaoshan; Zhang, Ruihua; Zhang, Tangduo; Isaacs, Farren; Leyva-Hernandez, Ariel; Ma, Natalie; Mao, Stephanie; Naidu, Yamini; Miinalainen, Tuukka; Aruanno, Marion; Calendini, Daniel; Chabert, Yoann; Chambonnier, Gael; Choukour, Myriam; De Gaulejac, Ella; Houy, Camille; Levier, Axel; Logger, Loreen; Nin, Sebastien; Prima, Valerie; Sturgis, James N.; Fang, Beibei; Cigdem, Sadik; Gutierrez, Alejandro; Poondla, Revanth; Reddy, Sanjana; Rocha, Tyler; Schulte, Natalie; Wehle, Devin; Jackowski, Marta Eva; Craig, Sean Ross; Mirzarafie-Ahi, Ariana; Parris, Elliott; Prout, Luba; Steijl, Barbara; Wellman, Rachel; Fan, Zhao; Jing, Zhang; Wei, Yang; Yuanzhan, Yang; Zhaosen, Wen; Appletion, Evan; Chen, Jeffrey; Patil, Abha; Priracha, Shaheer; Ryan, Kate; Salvador, Nick; Viola, John; Boralli, Camila Maria S; Bramorski, Camila Barbosa; Cancino-Bernardi, Juliana; De Lima, Ana Laura; Lins, Paula Maria Pincela; Melo, Cristiane Casonato; Mendonca, Deborah Cezar; Mosqueiro, Thiago; Silva, Everton; Vasconcelos, Graziele; Asthana, Ruchi; Lee, Donna; Yu, Michelle; Choi, Peter; Lau, Effie; Lau, Kenneth; Ying, Oscar; Malone, Brandon; Young, Paul; Ceney, Aidan; Hawthorne, Dakota; Lian, Sharon; Mellentine, Sam; Miller, Dylan; Moreira, Barbara Castro; Peebles, Christie; Smith, Olivia; Walsh, Kevin; Zimont, Allison; Brasino, Michael; Donovan, Michael; Young, Hannah; Bejvl, Jan; Georgiev, Daniel; Kasl, Hynek; Pechotova, Katerina; Pelisek, Vaclav; Sosnova, Anna; Zach, Pavel; Ciesla, Anthony; Hoover, Benjamin; Chapman, Elliott; Marles-Wright, Jon; Moynihan, Vicky; Owen, Liusaidh; Rothschild-Mancinelli, Brooke; Cuillery, Emilie; Heng, Joseph; Jacquot, Vincent; Malsot, Paola; Meli, Rocco; Pulver, Cyril; Sarfatis, Ari; Steiner, Loic; Steininger, Victor; Van Tiel, Nina; Thouvenin, Gregoire; Uran, Axel; Baumgartner, Lisa; Fomitcheva, Anna; Gerngross, Daniel; Jagger, Verena; Meier, Michael; Michel, Anja; Bird, Jasmine; Brown, Bradley; Burlington, Todd; Herring, Daniel; Slack, Joseph; Westwood, Georgina; Wojcik, Emilia; Bender, Julian; Donauer, Julia; Emig, Ramona; Jesser, Rabea; Neumann, Julika; Stuhn, Lara; Hasegawa, Takema; Kozakai, Tomoya; Maruyama, Haruka; Colloms, Sean; Flynn, Charlotte; Lomeikaite, Vilija; Provan, James; Ning, Kang; Tang, Shuyan; Wu, Guozhao; Yang, Yunjun; Zeng, Zhi; Zhan, Yi; Chu, Pan; Li, Jun; Yan, Keji; Athale, Chaitanya A.; Bodkhe, Swapnil; Gangan, Manasi; Gakhare, Harsh; Jawale, Yash; Kadam, Snehal; Moghe, Prachiti; Mundhe, Gayatri; Khetan, Neha; Phadke, Ira; Uniyal, Prashant; Zadey, Siddhesh; Cottignie, Ines; Deprez, Eline; Deryckere, Astrid; Janssens, Jasper; Jonnaert, Frederik; Malczewska, Katarzyna; Pak, Thomas; Robben, Johan; Thirukkumaran, Ovia Margaret; Van Deuren, Vincent; Vandebroek, Laurens; Van Hese, Laura; Van Wonterghem, Laetitia; Verschooten, Leen; Wolter, Moritz; Auty, Joss; Badge, Richard; Crawford, Liam; Dalgleish, Raymond; Evans, Amy; Grundy, Cameron; Kruczko, Charlie; Karia, Payal; Glaister, Graeme; Hakstol, Rhys; Mate, Seme; Otero, Karin; Smith, Dustin; Tingley, Jeff; Wieden, Hans Joachim; Wang, Haotian; Yao, Ningning; Franz, Matthias; Knoerlein, Anna; Koutsoubelis, Nicolas; Loechner, Anne C.; Mundt, Max; Richter, Alexandra; Schauer, Oliver; Buss, Marjorie; Tangirala, Sivateja; Teague, Brian; Huang, Tianyi; Song, Xinhao; Wei, Yibing; Zhang, Zhaoran; Cao, Longzhi; Li, Cheng; Yang, Kang; Chen, Zhiqin; Fang, Yuxing; Sun, Libo; Wang, Weiyi; Yang, Yang; Adams, David; Colls, Joshua; Timmons, Joshua; Urick, David; Adrian, Julia Anna; Akan, Madina; Chahibi, Youssef; Lale, Rahmi; Le Doujet, Typhaine; Roee, Marit Vaagen; Abdirakhmanova, Altynay; Orakov, Askarbek; Zhailauova, Azhar; Liang, Jinyang; Ma, Yu; Qin, Qikai; Su, Yetian; Han, Ju Yeon; Hull, Raphaella; Kong, Wei Chung; Lu, Li Chieh; Quinton, Duke; Aubert, Pauline; Bourdarias, Johan; Bugaud, Olivier; Demon-Chaine, Coralie; Hatin, Isabelle; Kaid-Slimane, Ibtissam; Kang, Seong Koo; Moatti, Audrey; Ndiaye, Cheikh Fall; Ananos, Mathilde; Arkhipenko, Alexander; Bailly, Valentin; Caput, Jules; Castillo, Javier; Chapet-Batlle, Alma; Cherrier, Floriane; Demarta-Gatsi, Claudia; Gopaul, Deshmukh; Gugger, Muriel; Lambert, Caroline; Krauss, Lucas; Vandendaele, Amelie; Xiaojing, Li; Xiaomei, Lin; Xunxun, Luo; Hansen, Anders Chr; Kronborg, Tina; Pettersen, Jens S.; Calvet, Charles; Devlin, Tyler Dae; Fujishima, Kosuke; Greenberg, Danny; Ju, Tina; Kent, Ryan; Kunin, Daniel; Lieberman, Erica; McCutcheon, Griffin; Nguyen, Thai; Rothschild, Lynn; Shih, Joseph D.; Takahashi, Jack; Thompson, Kirsten; Tran, Forrest; Xiang, Daniel; Richter, Felix; Xiaoran, Yang; Xiangyue, Hu; Deng, Changyuan; Hua, Shuyu; Li, Yumeng; Meng, Xinyu; Wang, Boxiang; Wang, Yingqi; Wang, Xuan; Xu, Zixuan; Yan, Jieyu; Yan, Ming; Zhou, Yineng; Orozco, Edgar Alberto Alcalá; Bermúdez, José Alberto Cristerna; Gómez, Daniela Flores; Castañeda, José Ernesto Hernández; Navarro, Diana Clarisse Montaño; Pérezávila, Juana Yessica; Figueroa, María Fernanda Salazar; Arroyo, María Fernanda Sánchez; Montesinos, Oliva Angélica Sánchez; Cruz, Ángel Farid Rojas; Gutiérrez, Carlos Ramos; Lona, Alonso Pérez; Olivares, Fernanda Sotomayor; Iniesta, Jorge Sebastián Rodríguez; Silva, Juan Carlos Rueda; Ayukawa, Shotaro; Kashiwagi, Takahiro; Kiga, Daisuke; Minegishi, Misa; Shinohara, Riku; Tokuma, Hiraku; Yamazaki, Yuta; Yasunishi, Shuhei; Zixuan, Erinn Sim; Afzal, Remsha; Carrigan, Matthew; Moran, Barry; Mucha, Marlena; Petrauskas, Arnas; Marsden, Stefan; Post, Michelle; Rodenburg, Anne; Sanguesa, Hector; Van Der Does, Marit; Van Rijn, Erwin; Van't Hof, Max; De Bruin, Yeshi; De Ferrante, Hans; Elschot, Elles; Jacobs, Laura; Muller, Jan Willem; Nooijens, Sjoerd; Vaassen, Femke; Van Der Putten, Cas; Van Leeuwen, Esther; Van Smeden, Laura; Zhu, Kwan Kwan; Sabath, Kevin; Sporbeck, Katharina; Von Kügelgen, Nicolai; Wellinger, Lisa; Braun, Stefanie; Ho, Jack; Mishra, Yash; Sebastian, Mariola; Von Chamier, Lucas; Ahsan, Fasih M.; Satyadi, Megan A.; Gunadhi, Vivienne; Kyriakakis, Phillip; Lee, Jenny; Thavarajah, Walter; Abtahi, Kimia; Hand, Robert; Loke, Chun Mun; Wahab, Adam; Zhu, Iowis; Del Bianco, Cristina; Chizzolini, Fabio; Godino, Elisa; Lentini, Roberta; Mansy, Sheref S.; Martin, Noel Yeh; Pegorar, Claudio Oss; Cook, Alexander; Kerns, Timothy; Nielsen, Chad; Paskett, Michael; Torgesen, Alexander; Lee, Stephen; Ospovat, Ophir; Raza, Sikandar; Shaykevich, Daniel; Shilts, Jarrod; Bajorinaite, Barbora; Bendorius, Mykolas; Rauluseviciute, Ieva; Savickyte, Ieva; Tumas, Sarunas; Buchser, William; Cryan, Elli; Golino, Caroline; Halleran, Andrew; Jacobs, Taylor; LeFew, Michael; Maniaci, Joe; Marken, John; Saha, Margaret; Vij, Panya; DeSanty, Kayla; Mazza, Julie; Jiang, YueWe present results of the first large-scale interlaboratory study carried out in synthetic biology, as part of the 2014 and 2015 International Genetically Engineered Machine (iGEM) competitions. Participants at 88 institutions around the world measured fluorescence from three engineered constitutive constructs in E. coli. Few participants were able to measure absolute fluorescence, so data was analyzed in terms of ratios. Precision was strongly related to fluorescent strength, ranging from 1.54-fold standard deviation for the ratio between strong promoters to 5.75-fold for the ratio between the strongest and weakest promoter, and while host strain did not affect expression ratios, choice of instrument did. This result shows that high quantitative precision and reproducibility of results is possible, while at the same time indicating areas needing improved laboratory practices.